EPCOTv2 Prediction & Visualization Platform

Predict diverse modalities by EPCOTv2

Generate comprehensive genomic and transcriptomic predictions using EPCOTv2's powerful AI model with your ATAC-seq data.

1

Specify genomic region (Range: 600kb)

Chromosome:

Interest region (Start - End):

Dropdown

From

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To

2

Select the modalities to predict

Checkbox Group

Epigenomic features (TF-bindings + 11 histone marks) RNA-seq Bru-seq Micro-C Hi-C Intact Hi-C TT-seq Additional TF-bindings RNA strand-specific GRO-seq GRO-cap PRO-seq NET-CAGE STARR-seq

Epigenomic features include transcription factors and 11 histone marks. View complete list →

Additional TF-bindings include extra transcription factors. View complete list →

3

Upload ATAC-seq data in pickle file (Automatically generate an .pickle file)

File

4

Download results

File

Error Messages

Genomic Data Plot Generator

Upload prediction files to generate and visualize genomic data plots.

1

Select visual modalities

Checkbox Group

Micro-C Hi-C Intact Hi-C RNA-seq Bru-seq TT-seq RNA strand-specific GRO-seq GRO-cap PRO-seq NET-CAGE STARR-seq Epigenomic features

2

Epigenome features

Dropdown

3

Upload prediction file in npz format & generate visualization

File

4

Preview

Generated plots will appear here

Upload a prediction file and click "Generate Plots" to start

Error Messages

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